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What does `pairaln` do? · Issue #628 · soedinglab/MMseqs2 · GitHub

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Clustering substrings · Issue #794 · soedinglab/MMseqs2 · GitHub

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Speed up huge protein sequences clustering · Issue #623 · soedinglab ...

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Convert BLAST databases to mmseq2 databases · Issue #47 · soedinglab ...

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No unique gene file generated · Issue #665 · soedinglab/MMseqs2 · GitHub

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E-value changes when using `--split-mode 0` (no way to set a constant ...

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Seeking input on clustering multiple samples · Issue #608 · soedinglab ...

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Feature request: split fasta cluster output into separate files · Issue ...

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